# filelist

dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Lang/src/tasks
filetypes: ffffff
filenames:
  ReadDocumentTaskFactory.cpp/ReadDocumentTaskFactory.h/SchemaEstimationTask.cpp/SchemaEstimationTask.h/WorkflowTasksRegistry.cpp/WorkflowTasksRegistry.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Lang/src/model
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffddd
filenames:
  ActorPrototypeRegistry.cpp/ActorPrototypeRegistry.h/Attribute.cpp/Attribute.h/AttributeRelation.cpp/AttributeRelation.h/Configuration.cpp/Configuration.h/ConfigurationEditor.cpp/ConfigurationEditor.h/ConfigurationValidator.h/Datatype.cpp/Datatype.h/DbiDataHandler.cpp/DbiDataHandler.h/DbiDataStorage.cpp/DbiDataStorage.h/Descriptor.cpp/Descriptor.h/ExternalToolCfg.cpp/ExternalToolCfg.h/GrouperOutSlot.cpp/GrouperOutSlot.h/GrouperSlotAttribute.cpp/GrouperSlotAttribute.h/IncludedProtoFactory.cpp/IncludedProtoFactory.h/IntegralBus.cpp/IntegralBus.h/IntegralBusModel.cpp/IntegralBusModel.h/IntegralBusType.cpp/IntegralBusType.h/Marker.cpp/Marker.h/MarkerAttribute.cpp/MarkerAttribute.h/MessageMetadata.cpp/MessageMetadata.h/PairedReadsPortValidator.cpp/PairedReadsPortValidator.h/Peer.h/Port.cpp/Port.h/PortRelation.cpp/PortRelation.h/QDConstraint.cpp/QDConstraint.h/QDScheme.cpp/QDScheme.h/QueryDesignerRegistry.cpp/QueryDesignerRegistry.h/ReadDbObjActorPrototype.cpp/ReadDbObjActorPrototype.h/RunFileSystem.cpp/RunFileSystem.h/Schema.cpp/Schema.h/SchemaActorsRegistry.cpp/SchemaActorsRegistry.h/SchemaConfig.h/SlotRelation.h/WorkflowContext.cpp/WorkflowContext.h/WorkflowEnv.cpp/WorkflowEnv.h/WorkflowManager.h/WorkflowScriptEngine.cpp/WorkflowScriptEngine.h/WorkflowTransport.cpp/WorkflowTransport.h/actor/url_attribute/wizard


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/pcr/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/pcr/_tmp/ui
filetypes: ffffffff
filenames:
  ui_EditPrimerDialog.h/ui_ExportPrimersDialog.h/ui_ImportPrimersDialog.h/ui_InSilicoPcrOptionPanelWidget.h/ui_PrimerGroupBox.h/ui_PrimerLibrarySelector.h/ui_PrimerLibraryWidget.h/ui_PrimersDetailsDialog.h


filetypes: ffff
dirname:
  /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/GUITestBase/src/runnables/ugene/plugins_3rdparty/hmm3

filenames:
  HmmerSearchDialogFiller.cpp/HmmerSearchDialogFiller.h/UHMM3PhmmerDialogFiller.cpp/UHMM3PhmmerDialogFiller.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2View/src/temperature/rough
filetypes: ffff
filenames:
  RoughTmCalculatorFactory.cpp/RoughTmCalculatorFactory.h/RoughTmCalculatorSettingsWidget.cpp/RoughTmCalculatorSettingsWidget.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Core/src/datatype/msa
filetypes: ffffffffff
filenames:
  Msa.cpp/Msa.h/MsaInfo.cpp/MsaInfo.h/MsaRow.cpp/MsaRow.h/MsaRowInfo.cpp/MsaRowInfo.h/MsaStateCheck.cpp/MsaStateCheck.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/GUITestBase/src/harness
filetypes: ffffffffffff
filenames:
  GUITestLauncher.cpp/GUITestLauncher.h/GUITestService.cpp/GUITestService.h/GUITestTeamcityLogger.cpp/GUITestTeamcityLogger.h/GUITestThread.cpp/GUITestThread.h/UGUITest.cpp/UGUITest.h/UGUITestBase.cpp/UGUITestBase.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/dna_stat/src
filetypes: ffffff
filenames:
  DNAStatMSAProfileDialog.cpp/DNAStatMSAProfileDialog.h/DNAStatPlugin.cpp/DNAStatPlugin.h/DistanceMatrixMSAProfileDialog.cpp/DistanceMatrixMSAProfileDialog.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins_3rdparty/phylip/src
filetypes: ffffffffffffffffffffffffffffffff
filenames:
  DistanceMatrix.cpp/DistanceMatrix.h/NeighborJoinAdapter.cpp/NeighborJoinAdapter.h/NeighborJoinWidget.cpp/NeighborJoinWidget.h/PhylipCmdlineTask.cpp/PhylipCmdlineTask.h/PhylipPlugin.cpp/PhylipPlugin.h/PhylipPluginTests.cpp/PhylipPluginTests.h/PhylipTask.cpp/PhylipTask.h/SeqBootAdapter.cpp/SeqBootAdapter.h/cons.cpp/cons.h/dist.cpp/dist.h/dnadist.cpp/dnadist.h/neighbor.cpp/neighbor.h/phylip.cpp/phylip.h/protdist.cpp/protdist.h/seq.cpp/seq.h/seqboot.cpp/seqboot.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins_3rdparty/variants/src
filetypes: ffffff
filenames:
  AssemblySamtoolsMpileup.cpp/AssemblySamtoolsMpileup.h/SamtoolMpileupWorker.cpp/SamtoolMpileupWorker.h/SamtoolsPlugin.cpp/SamtoolsPlugin.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/ugeneui/_tmp/moc/release
filetypes: fffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/libs_3rdparty/QSpec/src/core
filetypes: fffffffffffffff
filenames:
  CustomScenario.cpp/CustomScenario.h/GUITest.cpp/GUITest.h/GUITestBase.cpp/GUITestBase.h/GUITestOpStatus.h/GUITestsLauncher.cpp/GUITestsLauncher.h/MainThreadRunnable.cpp/MainThreadRunnable.h/MainThreadTimer.cpp/MainThreadTimer.h/TestThread.cpp/TestThread.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2View/src/ov_mca
filetypes: ffffffffffffffffffffffffffffddd
filenames:
  MaConsensusMismatchController.cpp/MaConsensusMismatchController.h/McaConsensusAreaRenderer.cpp/McaConsensusAreaRenderer.h/McaEditor.cpp/McaEditor.h/McaEditorConsensusArea.cpp/McaEditorConsensusArea.h/McaEditorNameList.cpp/McaEditorNameList.h/McaEditorOverviewArea.cpp/McaEditorOverviewArea.h/McaEditorReferenceArea.cpp/McaEditorReferenceArea.h/McaEditorSequenceArea.cpp/McaEditorSequenceArea.h/McaEditorStatusBar.cpp/McaEditorStatusBar.h/McaEditorWgt.cpp/McaEditorWgt.h/McaReferenceAreaRenderer.cpp/McaReferenceAreaRenderer.h/McaReferenceCharController.cpp/McaReferenceCharController.h/McaRowHeightController.cpp/McaRowHeightController.h/SequenceWithChromatogramAreaRenderer.cpp/SequenceWithChromatogramAreaRenderer.h/general_tab/overview/reads_tab


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/GUITestBase/src/runnables/ugene/corelibs/U2Gui
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffd
filenames:
  AddNewDocumentDialogFiller.cpp/AddNewDocumentDialogFiller.h/AlignShortReadsDialogFiller.cpp/AlignShortReadsDialogFiller.h/AppSettingsDialogFiller.cpp/AppSettingsDialogFiller.h/BuildIndexDialogFiller.cpp/BuildIndexDialogFiller.h/CommonImportOptionsDialogFiller.cpp/CommonImportOptionsDialogFiller.h/ConvertAssemblyToSAMDialogFiller.cpp/ConvertAssemblyToSAMDialogFiller.h/CreateAnnotationWidgetFiller.cpp/CreateAnnotationWidgetFiller.h/CreateDocumentFromTextDialogFiller.cpp/CreateDocumentFromTextDialogFiller.h/CreateObjectRelationDialogFiller.cpp/CreateObjectRelationDialogFiller.h/CreateRulerDialogFiller.cpp/CreateRulerDialogFiller.h/DownloadRemoteFileDialogFiller.cpp/DownloadRemoteFileDialogFiller.h/EditAnnotationDialogFiller.cpp/EditAnnotationDialogFiller.h/EditConnectionDialogFiller.cpp/EditConnectionDialogFiller.h/EditGroupAnnotationsDialogFiller.cpp/EditGroupAnnotationsDialogFiller.h/EditQualifierDialogFiller.cpp/EditQualifierDialogFiller.h/EditSequenceDialogFiller.cpp/EditSequenceDialogFiller.h/EditSettingsDialogFiller.cpp/EditSettingsDialogFiller.h/ExportChromatogramFiller.cpp/ExportChromatogramFiller.h/ExportDocumentDialogFiller.cpp/ExportDocumentDialogFiller.h/ExportImageDialogFiller.cpp/ExportImageDialogFiller.h/FindQualifierDialogFiller.cpp/FindQualifierDialogFiller.h/FindRepeatsDialogFiller.cpp/FindRepeatsDialogFiller.h/FindTandemsDialogFiller.cpp/FindTandemsDialogFiller.h/GTComboBoxWithCheckBoxes.cpp/GTComboBoxWithCheckBoxes.h/GraphSettingsDialogFiller.cpp/GraphSettingsDialogFiller.h/ImportACEFileDialogFiller.cpp/ImportACEFileDialogFiller.h/ImportAPRFileDialogFiller.cpp/ImportAPRFileDialogFiller.h/ImportBAMFileDialogFiller.cpp/ImportBAMFileDialogFiller.h/ImportOptionsWidgetFiller.cpp/ImportOptionsWidgetFiller.h/ImportToDatabaseDialogFiller.cpp/ImportToDatabaseDialogFiller.h/ItemToImportEditDialogFiller.cpp/ItemToImportEditDialogFiller.h/PositionSelectorFiller.cpp/PositionSelectorFiller.h/PredictSecondaryStructureDialogFiller.cpp/PredictSecondaryStructureDialogFiller.h/ProjectTreeItemSelectorDialogFiller.cpp/ProjectTreeItemSelectorDialogFiller.h/RangeSelectionDialogFiller.cpp/RangeSelectionDialogFiller.h/RangeSelectorFiller.cpp/RangeSelectorFiller.h/RemovePartFromSequenceDialogFiller.cpp/RemovePartFromSequenceDialogFiller.h/ReplaceSubsequenceDialogFiller.cpp/ReplaceSubsequenceDialogFiller.h/SetSequenceOriginDialogFiller.cpp/SetSequenceOriginDialogFiller.h/util


filetypes: ffffffff
dirname:
  /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/libs_3rdparty/breakpad/src/client/linux/dump_writer_common

filenames:
  mapping_info.h/raw_context_cpu.h/seccomp_unwinder.cc/seccomp_unwinder.h/thread_info.cc/thread_info.h/ucontext_reader.cc/ucontext_reader.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Formats/src/util
filetypes: fffffffff
filenames:
  AssemblyAdapter.h/AssemblyPackAlgorithm.cpp/AssemblyPackAlgorithm.h/PairedFastqComparator.cpp/PairedFastqComparator.h/SnpeffInfoParser.cpp/SnpeffInfoParser.h/TabulatedFormatReader.cpp/TabulatedFormatReader.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Core/src/gobjects
filetypes: ffffffffffffffffffffffffffffff
filenames:
  AnnotationTableObject.cpp/AnnotationTableObject.h/AssemblyObject.cpp/AssemblyObject.h/BioStruct3DObject.cpp/BioStruct3DObject.h/ChromatogramObject.cpp/ChromatogramObject.h/DNASequenceObject.cpp/DNASequenceObject.h/GObjectRelationRoles.cpp/GObjectRelationRoles.h/GObjectTypes.cpp/GObjectTypes.h/GObjectUtils.cpp/GObjectUtils.h/MsaObject.cpp/MsaObject.h/PFMatrixObject.cpp/PFMatrixObject.h/PWMatrixObject.cpp/PWMatrixObject.h/PhyTreeObject.cpp/PhyTreeObject.h/TextObject.cpp/TextObject.h/UnloadedObject.cpp/UnloadedObject.h/VariantTrackObject.cpp/VariantTrackObject.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Lang/src/model/url_attribute
filetypes: ffffffffff
filenames:
  Dataset.cpp/Dataset.h/DbFolderScanner.cpp/DbFolderScanner.h/SharedDbUrlUtils.cpp/SharedDbUrlUtils.h/URLAttribute.cpp/URLAttribute.h/URLContainer.cpp/URLContainer.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Lang/src/library
filetypes: ffffffffffffffffffffd
filenames:
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filenames: SmithWatermanDialogBaseFiller.cpp/SmithWatermanDialogBaseFiller.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/pcr/src/import
filetypes: ffffffffff
filenames:
  ImportPrimerFromObjectTask.cpp/ImportPrimerFromObjectTask.h/ImportPrimersDialog.cpp/ImportPrimersDialog.h/ImportPrimersFromFileTask.cpp/ImportPrimersFromFileTask.h/ImportPrimersFromFolderTask.cpp/ImportPrimersFromFolderTask.h/ImportPrimersMultiTask.cpp/ImportPrimersMultiTask.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/external_tool_support/src/cufflinks
filetypes: ffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/external_tool_support/src/blast
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filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2View/src/temperature
filetypes: ffffffd
filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Lang/src/support/external_script
filetypes: ffffff
filenames:
  ScriptContext.cpp/ScriptContext.h/ScriptableScheduler.cpp/ScriptableScheduler.h/WorkflowRunSerializedSchemeTask.cpp/WorkflowRunSerializedSchemeTask.h


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/dna_export/src
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filenames:
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filenames: RenameSequenceFiller.cpp/RenameSequenceFiller.h
filetypes: ff
dirname:
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filenames: KalignDialogFiller.cpp/KalignDialogFiller.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins_3rdparty/hmm2/src/u_search
filetypes: ffffffffffff
filenames:
  HMMSearchDialogController.cpp/HMMSearchDialogController.h/HMMSearchQDActor.cpp/HMMSearchQDActor.h/HMMSearchTask.cpp/HMMSearchTask.h/HMMSearchWorker.cpp/HMMSearchWorker.h/uhmmsearch.cpp/uhmmsearch.h/uhmmsearch_opt.cpp/uhmmsearch_opt.h


filenames: microdump_writer.cc/microdump_writer.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/repeat_finder/_tmp/moc/release
filetypes: ffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins_3rdparty/ball/src/source/STRUCTURE
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/dna_export/_tmp/ui
filetypes: ffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/external_tool_support/src/custom_tools
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/corelibs/U2Private/src/crash_handler
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/external_tool_support/src/trimmomatic/steps
filetypes: ffffffffffffffffffffff
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/dna_export/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffffff
filenames:
  moc_CSVColumnConfigurationDialog.cpp/moc_ConvertMca2MsaTask.cpp/moc_DNAExportPlugin.cpp/moc_DNAExportPluginTests.cpp/moc_DNASequenceGenerator.cpp/moc_DNASequenceGeneratorDialog.cpp/moc_ExportAlignmentViewItems.cpp/moc_ExportBlastResultDialog.cpp/moc_ExportChromatogramDialog.cpp/moc_ExportMSA2MSADialog.cpp/moc_ExportMSA2SequencesDialog.cpp/moc_ExportMca2MsaDialog.cpp/moc_ExportMca2MsaTask.cpp/moc_ExportProjectViewItems.cpp/moc_ExportQualityScoresTask.cpp/moc_ExportQualityScoresWorker.cpp/moc_ExportSelectedSeqRegionsTask.cpp/moc_ExportSequenceTask.cpp/moc_ExportSequenceViewItems.cpp/moc_ExportSequences2MSADialog.cpp/moc_ExportSequencesDialog.cpp/moc_ExportUtils.cpp/moc_GenerateDNAWorker.cpp/moc_GetSequenceByIdDialog.cpp/moc_ImportAnnotationsFromCSVDialog.cpp/moc_ImportAnnotationsFromCSVTask.cpp/moc_ImportQualityScoresTask.cpp/moc_ImportQualityScoresWorker.cpp/moc_McaEditorContext.cpp/moc_SaveSelectedSequenceFromMSADialogController.cpp


dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/external_tool_support/src/utils
filetypes: ffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-50.0-1.fc39.ppc64le/src/plugins/dbi_bam/src
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