29 Oct 2011 - Human ENCODE data releases: SYDH TFBS, CSHL Long RNA-seq, GIS RNA PET, UW DNaseI HS (release 3), Mapability (Release 3)
Three new tracks and two track updates were released on the hg19 genome browser:
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard:
This comprehensive track shows 306 ChIP-seq experiments identifying transcription factor binding sites in
19 cell types.
Long RNA-seq from ENCODE/Cold Spring Harbor Lab:
This comprehensive track from the ENCODE Transcriptome group shows RNAs longer than 200 nucleotides. Profiling was performed on RNA extracts enriched and depleted for polyA+, in multiple cellular compartments and whole cell, in 15 cell lines.
RNA Subcellular Localization by Paired End diTag Sequencing from GIS/ENCODE:
This track from the ENCODE Transcriptome group shows starts and ends of full length mRNA transcripts determined by GIS paired-end ditag (PET) sequencing.
Experiments were conducted in 7 cell lines and one tissue (prostate), with RNA extracted from 6 isolated cellular compartments and in whole cell.
19 Sept 2011 - Mouse ENCODE data releases: Stan/Yale Histone, LICR TFBS, LICR RNA-seq, Stan/Yale TFBS (Release 2)
Three new tracks and one track update were released on the mm9 genome browser:
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale:
This track shows locations of histone H3K4me3 modification in CH12 and MEL cell types.
The two cell lines were selected for similarity to the ENCODE Tier1 cell lines (GM12878 and K562).
Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR, and
RNA-seq from ENCODE/LICR:
These tracks show transcriptome and Pol2, p300 and CTCF binding sites in mouse bone marrow, cerebellum, cortex, heart, kidney, liver, lung, spleen, embryonic fibroblast cells (MEFs) and embryonic stem (ES) cells.
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale (Release 2):
This release adds binding site localization for 13 additional transcription factors to the previously released TFBS track.
15 Sept 2011 - Summer ENCODE human data releases: GENCODE Genes V7, HAIB TFBS, Stanf Nucleosome, HAIB Genotype, SUNY RIP-seq, SUNY Switchgear
Six tracks of human ENCODE data were released in late summer on the hg19 genome browser:
Read more.
|